Ciosi et al. 2014 PLOS Neglected Tropical Diseases

Genotypes at 9 microsatellite loci corresponding to Glossina pallidipes samples


The file "2013-06-10 BUS+IAEA2012-2013+Zim_ALPHA&BETA.xlsx" contains the genotypes of 121 Glossina pallidipes individuals from two field population samples and from two samples from the IAEA laboratory colony.

These genotype data have been used in the publication by Ciosi et al. 2014 PLOS Neglected Tropical Diseases untitled "Laboratory colonisation and genetic bottlenecks in the tsetse fly Glossina pallidipes"

YOU WILL FIND BELOW SOME INFORMATION ABOUT THE FORMATING OF THE FILE "2013-06-10 BUS+IAEA2012-2013+Zim_ALPHA&BETA.xlsx"

# columns A to G include information about the sample collection and aquisition (collection date, site and collector).

# Columns H to J correspond to the sample/genotype IDs.

# Columns K to AB correspond to actual microsatellite genotype data.
Data are available at the following 9 loci:
GmmK06
GmmC17
GpC10b
GpC101
GpB115
GpCAG133
GmmA06
GpA19a
Gpc26b

the name of the loci are indicated as the header for each column

between columns K and AB the genotypes per locus are actually indicated in two columns.

For example column K correspond to allele 1 at locus GmmK06 and column L correspond to allele 2 at locus GmmK06.

missing data are indicated by a triple zero "000".

# columns AD to AM correspond to the same data set partly formated for the population genetics software GENEPOP.

in such format, the sample ID (column AD untitled "GP_Ind") correspond to the content of column H untitled "Sample#individual" followed by a comma ","

In column AE to AM the two alleles at each locus have been concatenated to obtain a single column per locus.

(more info about the complete GENEPOP input format can be found here:
http://www.genepop.curtin.edu.au/help_input.html)